PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05439_BGI-A2_v1.0
Common NameF383_02388
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 569aa    MW: 61336.2 Da    PI: 9.0333
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05439_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-057395123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C++C+k F r  nL+ H r H
  Cotton_A_05439_BGI-A2_v1.0 73 FVCEICNKGFQRDQNLQLHRRGH 95
                                89*******************88 PP

2zf-C2H212.50.00043149171123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC++C+k +  +s+ k H +t+
  Cotton_A_05439_BGI-A2_v1.0 149 WKCEKCSKKYAVQSDWKAHSKTC 171
                                 58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.93E-77295No hitNo description
PROSITE profilePS5015710.9497395IPR007087Zinc finger, C2H2
SMARTSM003550.0177395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM0035567114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.93E-7144169No hitNo description
SMARTSM00355140149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSNLTSASAS GEASVSSGNR TEAGSNYPQQ YFTTSQQPQT QPVKRKRNLP GNPDPDAEVI  60
ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVR KKVYVCPETN  120
CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AVESARAINP LLSPHQPGTA AASHMNLQVP QFNPHDIKLQ  240
PFSLKKEQQS FTPLRPEIPP WLASQPMLGA GPGPPHPIDL SSSSSSIFSP RLDHQDLTLH  300
GTPSANPSLV PTLPPYHHTA LPSPHMSATA LLQKAAHMGA TMSRKSGSSS VPSTVAAAAS  360
ASLMRPHQQT HVSADSAGTN NNTTTAGFGL DLHSREELDV GSSSGIIHGL APFGNRKPAA  420
NAGDDDDDNN NIAGSGATPS LLQDMINSLS SATGFDATNS FDDIAFGGIF NATKKLCGSS  480
INESFSKTTT PTVPTTTNAT RNDHHGSTAG STTTTTTTTQ GGDQGLTRDF LGLRAFSHTD  540
ILNIAGPGRN YCIDTSHEQH NQSQKPWQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199111KLKQRTNKEVRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271320.0HQ527132.1 Gossypium herbaceum clone NBRI_D2_310 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442745.10.0PREDICTED: protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-122IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0B0NH250.0A0A0B0NH25_G
STRINGVIT_09s0002g02300.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-101C2H2-like zinc finger protein